How can I compute $P(X > 3Y)$ where $X, Y \sim U(-1, 1)$? I got $1/2$ since $\int_{-1}^{1} \int_{3y}^{1} \frac{1}{4} \mathop{dx dy} = 1/2$ but it seems wrong since $P(X > Y)$ should be $1/2$.
How about $P(X > 3Y \mid X > 0)?$ I think this is $(1/6)/2 = 1/12$ by drawing a picture but not completely sure.
Here's my picture for the first part:

Independence of $X$ and $Y$ is essential for this. Otherwise you cannot compute $P(X>3Y)$.
Your integral is wrong. The integral from $3y$ to $1$ w.r.t. $x$ appears only when $3y<1$ or $y <\frac 1 3$. Similarly you have to make sure that $3y >-1$. So the correct integral is $\int_{-1/3}^{1/3} \int_{3y}^{1} \frac 1 4 dxdy+\int_{-1}^{-1/3} \int_{-1}^{1} \frac 1 4 dxdy$.
For the conditional probability compute $\int_{0}^{1/3} \int_{3y}^{1} \frac 1 4 dxdy+\int_{-1/3}^{0} \int_{0}^{1} \frac 1 4 dxdy+\int_{-1}^{-1/3} \int_{0}^{1} \frac 1 4 dxdy$. and divide by $P(X>0)$ which is $\frac 1 2$.