The title is quite a mouthful, so let me develop some context. All of this is from the book on Hilbert Modules by C. Lance.
If $A$ is a $C^*$-algebra, $M(A)$ its multiplier algebra and $B$ a sub-algebra of $M(A)$ then a positive linear map $\tau: A\to B$ is called a retraction if:
- For all $a\in A, b\in B$: $\tau(ab)= \tau(a)b$
- $\tau(A)$ is dense in $B$ relative to the strict topology.
- There is an approximate identity $e_\alpha$ in $A$ so that $\tau(e_\alpha)$ converges to a projection in $B$.
A retraction is additionally called faithful if $\tau(a)>0$ for all positive $a>0$ in $A$.
If $E$ is a Hilbert $A$-module and $\tau: A\to B$ is a faithful retraction one can also give $E$ the structure of a Hilbert $B$ module via: $$x\cdot b := \lim_\alpha x\cdot e_\alpha \cdot b,\qquad \langle x,y\rangle_\tau := \tau(\langle x,y\rangle) \quad\text{for all $x,y\in E$, $b\in B$}.$$ Any adjointable map (wrt $\langle \cdot,\cdot\rangle$) $t:E\to E$ is also adjointable wrt $\langle\cdot,\cdot\rangle_\tau$, giving a $*$-morphism $$\pi_\tau:\mathcal L_A(E, \langle \cdot,\cdot\rangle)\to \mathcal L_B(E, \langle\cdot,\cdot\rangle_\tau),$$ $\pi_\tau$ is called the localisation of $\tau$. In the above case of a faithful retraction this map is clearly injective. On page 58 of his book Lance remarks without comment that it is actually an isomorphism.
Is the localisation $\pi_\tau$ also surjective for faithful $\tau$?
I think a simple (finite dimensional) counter-example is possible, but the above book is quite well regarded and it would be strange to have such an error, so I do not trust my counter-example.
I think I agree (like you, I find it hard to think that Lance was wrong...) that there is a problem here. For convenience of other readers, let me state that your counter-example is a special case of an example which Lance considers on page 58; see also page 39. Here I'll follow page 39. (A related question with I believe an incorrect answer).
Let $E$ be a Hilbert $A$-module, and consider $E^n$ as a Hilbert $M_n(A)$ module for the action and inner-product $$ x\cdot a = \big(\sum_i x_i \cdot a_{ij}\big)_{j=1}^n \quad \langle x,y\rangle = \big( \langle x_i, y_j \rangle \big)_{i,j=1}^n \qquad (x=(x_i)\in E^n, a=(a_{ij})\in M_n(A)). $$
Let $T$ be a linear map $E^n\rightarrow E^n$ say $T(x) = \big( T_i(x) \big)$ for some linear maps $T_i:E^n\rightarrow E$, say $T_i(x) = \sum_{j=1}^n T_{i,j}(x_j)$ for linear maps $T_{i,j}:E\rightarrow E$. If $T$ is adjointable, it is in particular $M_n(A)$-linear (and bounded), so \begin{align*} T(x\cdot a) = T(x)\cdot a \quad & \implies\quad \big( T_i(x\cdot a) \big)_i = \big( T_j(x) \big)_j \cdot a \\ & \implies\quad \forall\,i\quad \sum_j T_{i,j}((x\cdot a)_j) = \sum_j T_j(x) \cdot a_{ji} \\ & \implies\quad \forall\,i\quad \sum_{j,k} T_{i,j}(x_k\cdot a_{kj}) = \sum_{j,k} T_{j,k}(x_k) \cdot a_{ji} \end{align*} If $x_i = \delta_{i,i_0} x$ and $a_{ij} = \delta_{i,i_1}, \delta_{j,j_0} a$ then we obtain $\delta_{i_0,i_1} T_{i,j_0}(x\cdot a) = \delta_{i,j_0} T_{i_1,i_0}(x) \cdot a$ for all $i$. So $T$ is "diagonal", and with $i_0=i_1, i=j_0$ we get $T_{j_0,j_0}(x\cdot a) = T_{i_0,i_0}(x) \cdot a$. So there is an $A$-linear, bounded map $T'$ say, with $T_{i,j} = \delta_{i,j} T'$.
Let us check this with a different calculation, using adjoints. Let $T$ be as before, and let $S$ be similar, so $$ \langle T(x), y \rangle = \big( \langle T_i(x), y_j \rangle \big)_{i,j}, \qquad \langle x, S(y) \rangle = \big( \langle x_i, S_j(y) \rangle \big)_{i,j}. $$ We would like these to be equal, for all $x$ and $y$, so $$ \forall\, i,j \quad \sum_k \langle T_{i,k}(x_k), y_j \rangle = \sum_k \langle x_i, S_{j,k}(y_k) \rangle. $$ Again, set $x_i = \delta_{i,i_0}x, y_j = \delta_{j,j_0} y$ to obtain $\langle T_{i,i_0}(x), y \rangle \delta_{j,j_0} = \langle x, S_{j,j_0}(y) \rangle \delta_{i,i_0}$ for all $i,j$. So again $T,S$ are diagonal, and $\langle T_{i_0,i_0}(x), y \rangle = \langle x, S_{j_0,j_0}(y) \rangle$ for all $i_0, j_0$. So there is $T\in\mathcal L(E)$ with $T_{i,j} = \delta_{i,j} T$ and $S_{i,j} = \delta_{i,j} T^*$.
Thus we seem to have proved that $\mathcal{L}_{M_n(A)}(E^n) \cong \mathcal{L}_A(E)$, acting diagonally on $E^n$. Note that the only thing which seems incorrect on pages 57--58 is that $\pi_\tau$ (in the notation of the OP) need not be surjective (exactly as the OP questioned).
Update: I am trying to see where Lance goes wrong. If $\tau$ is faithful then the null space $N_\tau$ is $\{0\}$ and so $E$ (and not just a quotient) is a $B$-module. The $B$ module action is just the restriction of the $M(A)$ action (in the example, already $M(A)=A$). I guess the mistake is then believing that $\mathcal{L}_{M(A)}(E)\rightarrow \mathcal{L}_B(E)$ is onto, because it's the same $E$. This isn't true because, informally, $B$ being "smaller than" $M(A)$ means that it's "easier" to be adjointable for $B$, and thus the codomain of $\pi_\tau$ might well be larger than the domain.
A further thought: Lance's own example on page 58, involving a state, is also a counter-example! If $\rho$ is a state on $A$ then we obtain a retraction $\rho:A\rightarrow B=\mathbb C1\subseteq M(A)$, and $E_\rho$ is a Hilbert space. If $A$ is separable, we can pick a faithful $\rho$, and so the claim would be that $\pi_\rho:\mathcal{L}_A(E)\rightarrow \mathcal{L}(E_\rho)$ is onto, where the right-hand side is all bounded linear maps. This seems hugely unlikely!