All I got is that
$$12y_1 + 7y_2 + 10y_3 = 2(0) + 4(10.4) + 3(0) + 1(0.4)$$
and
$y_2 = 0$ because $x_6$ is in basis.
How do I find $y_1$ and $y_3$ without going through the simplex method?
I took the dual and that doesn't seem to help.
I know that $y_1 = z_5 - c_5$ and $y_3 = z_7 - c_7$, but how do I find $z_i - c_i$?
From Chapter 2 here.

Consider the dual:
$$\min z' = 12y_1 +7y_2 + 10y_3$$
s.t.
$$\begin{bmatrix} 3 & 1 & 2\\ 1 & 3 & 1\\ 1 & 2 & 3\\ 4 & 3 & -1 \end{bmatrix}\begin{bmatrix} y_1\\ y_2\\ y_3 \end{bmatrix} \ge \begin{bmatrix} 2\\ 4\\ 3\\ 1 \end{bmatrix}$$
Since the dual of the dual is the primal, the dual of the dual variables are the primal variables.
Using complementary slackness on the dual, we have:
$$x_1 \mathcal{S}_1 = 0$$
$$x_2 \mathcal{S}_2 = 0$$
$$x_3 \mathcal{S}_3 = 0$$
$$x_4 \mathcal{S}_4 = 0$$
$$\because x_2, x_4 > 0, \mathcal{S}_2 = \mathcal{S}_4 = 0$$
Thus,
$$\begin{bmatrix} 1 & 3 & 1\\ 4 & 3 & -1 \end{bmatrix}\begin{bmatrix} y_1\\ y_2\\ y_3 \end{bmatrix} = \begin{bmatrix} 0\\ 0 \end{bmatrix}$$
$$\to \begin{bmatrix} 1 & 3 & 1\\ 4 & 3 & -1 \end{bmatrix}\begin{bmatrix} y_1\\ 0\\ y_3 \end{bmatrix} = \begin{bmatrix} 0\\ 0 \end{bmatrix}$$
$$\to \begin{bmatrix} 1 & 1\\ 4 & -1 \end{bmatrix}\begin{bmatrix} y_1\\ y_3 \end{bmatrix} = \begin{bmatrix} 0\\ 0 \end{bmatrix}$$
$$\to y_1 = 1, y_3 = 3$$