I have just learnt about Markov chains and have been unsure of where in the matrix $P(0,0)$ refers to exactly (Whether its the top left or bottom right)- I happen to be ignorant of linear algebra, but have researched this topic to no avail, finding notions of coordinates with respect to vectors, which aren't mentioned here. I would appreciate help on how to interpret the coordinates in the below matrix, and in general how to interpret coordinates with no mention of vectors:
We define the transition probability matrix $P$ by $P(0,0)=1-a, P(0,1)=a, P(1,0)=a, P(1,1)=1-a$. That is $$ P=\left[\begin{array}{cc} 1-a & a \\\\ a & 1-a \end{array}\right] . $$Hence, $$ \operatorname{Pr}\left[X_{n+1}=j \mid X_n=i, X_{n-1}, \ldots, X_0\right]=P(i, j), \text { for } n \geq 0 \text { and } i, j \in\{0,1\} $$
thank you
For stochastic matrices, you have to watch the convention, whether the source means row stochastic or column stochastic (that is, which direction sums to 1. This matrix is doubly stochastic so it isn't a big deal). But in general, when we mention a matrix, we use the "rows-then-columns" convention.
The matrix $A$ is $m \times n$, which means it has $m$ rows and $n$ columns. The entry $a_{ij}$ is the entry of $A$ in row $i$, column $j$, always starting from the top left.
In this case, the transition matrix is symmetric, so $P(i, j) = P(j, i)$.