Is $\mathbb{C}$ still algebraically closed in ZF-models without the Axiom of Choice (AC) ?
I know several results about algebraic closures of fields in models with AC become really delicate in ZF-models without AC.
So this must be one of the basic questions, I guess (but I cannot find a clear reference or definite proof online).
Side question: do finite fields have "unique" algebraic closures (i. e. up to isomorphism) in ZF-models without AC?
Yes, $\mathbb{C}$ is still algebraically closed. You can prove this by going through any of the usual proofs (e.g. via Liouville's theorem) and seeing that choice is never used.
Alternately, you can use a nuke: Shoenfield's absoluteness theorem says that in a precise sense choice cannot be relevant to theorems of this simplicity.$^1$ There is absolutely no reason to use Shoenfield here ... except that it's really funny.
$^1$Technically, Shoenfield showed that every $\Pi^1_2$ sentence true in $L$ is true is true in $V$, under the assumption that $V\models\mathsf{ZF}$. Since $L\models\mathsf{ZFC}$ and "$\mathbb{C}$ is algebraically closed" is $\Pi^1_2$, this gives the desired result. Moreover, Shoenfield is completely constructive: it gives a totally explicit (if rather unsatisfying) way to transform a $\mathsf{ZFC}$-proof of a $\Pi^1_2$ sentence into a $\mathsf{ZF}$-proof. It's also worth noting that Shoenfield is actually even broader than this - e.g. it also lets us remove the continuum hypothesis from proofs of $\Pi^1_2$ sentences, and many more hypotheses besides.