Suppose I have an orthonormal basis $$B = \left \{ u_{i} \right \}_{i=1}^{\infty}$$
Then for a matrix $K$, do I represent it as $$K = \sum_{j,k=0}^{\infty}k_{jk}\left ( u_{i}\bigotimes u_{j} \right )$$
or
$$K = \sum_{j,k=0}^{\infty}k_{jk}\left ( u^{i}\bigotimes u^{j} \right )\ ?$$
I'm inclined to believe the second form is correct. However, my notes stipulates the first one to be correct—quite possibly a blunder on the author's end.
Clarifications would be helpful.
This is a matter of convention that differs between literatures and depending on what you're doing. If you're going to use raised indices in a meaningful way, then I'd expect to see the basis written as $$ B = \{ u^i \}_{i=1}^{\infty} $$ with the index up on vectors. Then your second option for $K$ would be correct. Since you wrote the vectors in the basis with index down, it seems like you're in a convention where all indices are down and the first option is correct.