Given $y \in \mathbb R^n$ and $A \in \mathbb R^{n \times n}$, whis is some way for
$$\min_x \| y- Ax\|$$ subject to $\|x\|=1$, and $x \geq 0$ (which means every components of $x$ is nonnegative)?
Is there any book discussing such a problem? Thanks!
Remark: The objective functions $\left\| A x - y \right\|$ and $\frac{1}{2} {\left\| A x - y \right\|}$ are equivalent, while the latter is differentiable and easier to handle.

You didn't specify but I presume you mean to use the Euclidian norm. Your problem is nonconvex so in general you won't be able to find an analytical expression for a solution.
The problem without the bound constraints $$ \min \|Ax-b\| \quad \text{subject to} \ \|x\| = \Delta $$ is well understood and, despite the fact that it is nonconvex, we have a characterization of its global solutions from the Gay-Dennis-Welsh theorem. See for instance Theorem 7.2.1 in http://www.ec-securehost.com/SIAM/MP01.html It may be found numerically using the method of Moré and Sorensen (described in the same book).
The problem without the norm constraint is also well understood and you'll find in fact methods for the problem where the norm constraint is a inequality instead of an equality, i.e., $$ \min \|Ax-b\| \quad \text{subject to} \ \|x\| \leq \Delta, \ x \geq 0 $$ in standard textbooks on linear least-squares problems because this problem is closely related to the regularized least-squares problem $$ \min \|Ax-b\| + \delta \|x\| \quad \text{subject to} \ x \geq 0. $$ These are convex problems. See for instance Chapter 5 in http://www.ec-securehost.com/SIAM/ot51.html or Chapters 20-23 in http://www.ec-securehost.com/SIAM/CL15.html
As someone else mentioned, interior-point methods are of interest for the convex problem ($\|x\| \leq \Delta$) but they can also be applied to the nonconvex problem ($\|x\| = \Delta$). However, you'll have to apply a generic interior-point method that won't be able to exploit your least-squares structure. I'm not aware of a method specifically designed for your problem.
I hope this already helps.
(I'm not affiliated with SIAM but they happen to have a great book collection.)