Without references, Wikipedia says:
Concept A is a special case or specialization of concept B precisely if every instance of A is also an instance of B but not vice versa
Many mathematicians agree with Wikipedia that a concept has to be strictly more general than its special cases.
However, some mathematicians also believe that a special case can be an equivalent case. For example, perfect numbers are a special case of perfect numbers.
Although in many cases it is easy to tell whether the relation is strict or not, in some complicated math structures the strictness is not always obvious.
What is the precise definition of "special case"? Any reference or consensus?
(For example, in topology, the related terms such as "generalization" and "specialization" are precisely defined.)

Definitions are for mathematical objects. "Concepts" are informal; to the best of my understanding, there is no such thing as "concept theory" (or if there is, the term "concept" presumably has some highly technical meaning that is unfamiliar to me, and in any case it would not be relevant to this discussion). As a result, the words we use to describe concepts are always going to be a little bit squishy, and I think it is unlikely that anyone will be able to provide serious citations for a definition like this. Definitions might appear in introductory textbooks, but each textbook author will have their own conventions, and you will not find perfect consistency here.
Most people would probably understand perfect numbers to not be a "special case" of perfect numbers. When we say that X is a special case of Y, in addition to literally stating that X is a subset of Y, we're (usually) also trying to communicate the fact that X has some feature which makes it particularly easy, straightforward, or interesting to reason about in comparison to the rest of Y. This tends to imply that "the rest of Y" is nonempty, and so X = Y would usually not make much sense.
I can think of one example where we might write something like this, and that's when it is unknown whether X and Y are the same. For example, even perfect numbers might be called a "special case" of perfect numbers, because they have many interesting and well-understood properties that might not generalize to odd perfect numbers (e.g. their relationship with the Mersenne primes). It is conjectured that all perfect numbers are even. If that conjecture were proven, then the properties of even perfect numbers would be vacuously true of odd perfect numbers, and so even perfect numbers could no longer be plausibly characterized as a special case. But while the problem remains open, I would have no objection to describing them that way.