What is $[\mathbb{Q}(i,\sqrt{2},\sqrt{3}):\mathbb{Q}]$?
On the one hand, we have $[\mathbb{Q}(i,\sqrt{2},\sqrt{3}):\mathbb{Q}(i,\sqrt{2})]\cdot[\mathbb{Q}(i,\sqrt{2}):\mathbb{Q}(i)]\cdot[\mathbb{Q}(i):\mathbb{Q}]=2^3=8.$
On the other hand, the minimum polynomial in $\mathbb{Q}[x]$ containing $i,\sqrt{2},\sqrt{3}$ as roots is $(x^2+1)(x^2-2)(x^2-3)$, which is of degree $6$.
What am I misunderstanding?
8 sounds right, and your reasoning is right as well. $\mathbb{Q}[i,\sqrt{2},\sqrt{3}]$ is the splitting field of the polynomial you gave. The only thing you might be missing is the degree of the splitting field is not necessarily the degree of the polynomial itself.