Obtain a closed-form for the series: $$\mathcal{S}=\sum_{n=1}^{\infty}\frac{(-1)^{n-1}}{4^nn^2}\binom{2n}{n}$$
From here https://en.wikipedia.org/wiki/List_of_m ... cal_series we know that for $\displaystyle{\left| z \right| \le \frac{1}{4}}$ holds $$\sum\limits_{n = 0}^\infty \binom{2n}{n} z^n = \frac{1}{\sqrt {1 - 4z} }$$
Then \begin{align} &\sum\limits_{n = 0}^\infty \binom{2n}{n} \frac{{{z^n}}}{{{4^n}}} = \frac{1}{\sqrt {1 - z} } \\ &\Rightarrow \sum_{n = 1}^\infty \binom{2n}{n} \frac{z^n}{4^n} = \frac{1}{\sqrt {1 - z} } - 1 \\ &\Rightarrow \sum_{n = 1}^\infty \binom{2n}{n} \frac{z^{n - 1}}{4^n} = \frac{1 - \sqrt {1 - z} }{z \sqrt {1 - z} } \\ &\Rightarrow \sum\limits_{n = 1}^\infty \binom{2n}{n} \frac{y^n}{n 4^n} = \int_0^y {\frac{{1 - \sqrt {1 - z} }} {{z \sqrt {1 - z} }}dz} = 2\left( \log 2 - \log \left(1 + \sqrt {1 - y} \right) \right) \\ &\Rightarrow \sum_{n = 1}^\infty \binom{2n}{n} \frac{y^{n - 1}}{n 4^n} = 2\left( {\frac{{\log 2 - \log \left( {1 + \sqrt {1 - y} } \right)}}{y}} \right) \\ &\Rightarrow \sum_{n = 1}^\infty \binom{2n}{n} \frac{x^n}{n^2 4^n} = 2 \int_0^x {\frac{{\log 2 - \log \left( {1 + \sqrt {1 - y} } \right)}}{y}dy} \end{align}
With $S$ the constant to be computed, we have the following explicit yellow expression: $$ \begin{aligned} S&=\sum\frac{(-1)^{n-1}}{4^n\: n^2}\binom{2n}n\\ &=2\int_0^{-1}(\log2 -\log(1+\sqrt{1-y}))\;\frac{dy}y\qquad\text{ (OP formula)} \\ &=2\int_0^1\log\underbrace{\left(\frac{1+\sqrt{1+y}}2\right)}_{=:t}\;\frac{dy}y \\ & =2\int_1^{(1+\sqrt 2)/2=:a}\frac{2t-1}{t(t-1)}\;\log t\;dt = 2\int_1^a\left(\frac{t}{t(t-1)}+\frac{t-1}{t(t-1)}\right) \;\log t\;dt \\ &= 2\int_1^a\frac{\log t}{t-1}\; dt+ 2\int_1^a\frac{\log t}t\; dt \\ &= -2\Bigg[\operatorname{Li}_2(1-t)\Bigg]_1^a+ \Bigg[\log^2 t\Bigg]_1^a \\ &=-2\operatorname{Li}_2(1-a)+\log^2 a =\bbox[yellow]{-2\operatorname{Li}_2\left(\frac{1-\sqrt2}2\right)+\log^2\left(\frac{1+\sqrt2}2\right)}\ . \end{aligned} $$
Numerical checks, here pari/gp