An un-directed graph $G$ is given.
The diameter of a graph is the maximum of shortest paths between two vertices of the graph.
$L(S)$ is maximum length of shortest paths from $S$ to other vertices.
The radius of a graph is minimum value of $L(S)$ among all vertices.
If $d$ and $r$ be diameter and radius of graph two following inequalities always hold:
$A)$ $r \leq d$
$B)$ $r \geq \frac{d}{2}$
But my note tells me that $B$ is better than of $A$ (maybe by 'better' word, it means that it always holds or any condition that be logical... I don't know for example one of them works with negative weights or anything else in Graph)
I see both of them in all of graph books but anyone can distinguish between these two case, is there any difference here that we can prefer $B$ to $A$?
Let me begin by saying that your question almost makes no sense. As @MorganRodgers very explicitly said, when comparing bounds, you need $2$ lower ones or $2$ higher ones, to find which one is better.
You cannot prefer a lower bound over a higher bound or viceversa. They do different things It's like saying you prefer to draw with a spoon over eating soup with a pencil.
However, I think what you want to prove is the fact that $d-r>r-\frac{d}{2}$, in other words, the lower bound is closer to the actual value than the higher bound.
Lets begin by clarifying the notions. Consider a graph $G$ and let the set of the vertices of $G$ be $V(G)$.
Using what we have just found out, we can see that sometimes the higher bound is closer to $r$ than the lower bound and sometimes the lower bound is closer to $r$ than the higher bound.
For example take a complete graph $K_n$. In this case, $d=r=1$ so $d-r=0<\frac{1}{2}=r-\frac{d}{2}$ so in this case we could say that the higher bound is "better".
But when we take a complete bipartition $K_{n,n}$, $d=2$ and $r=1$ so in this case $d-r=1>0=r-\frac{d}{2}$
So to conclude the answer, sometimes the $\frac{d}{2}$ is closer to $r$ and sometimes $d$ is closer to $r$. You cannot prefer a bound over another.